HL_7OJ0_052

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

7OJ0|1|a|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_052 not in the Motif Atlas

Geometric match to HL_3DIL_003

Geometric discrepancy: 0.2621

The information below is about HL_3DIL_003

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7OJ0|1|a|C|611
7OJ0|1|a|G|612
7OJ0|1|a|A|613
7OJ0|1|a|A|614
7OJ0|1|a|U|615
7OJ0|1|a|A|616
7OJ0|1|a|G|617

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4