HL_7OJ0_070

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

7OJ0|1|a|C|1493, 7OJ0|1|a|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_070 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1517

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7OJ0|1|a|G|1492
7OJ0|1|a|C|1493
7OJ0|1|a|A|1494
7OJ0|1|a|A|1495
7OJ0|1|a|A|1496
7OJ0|1|a|U|1497
7OJ0|1|a|C|1498

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2