HL_7OJ0_104

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGCC(G7M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_104 not in the Motif Atlas

Homologous match to HL_4LFB_033

Geometric discrepancy: 0.1496

The information below is about HL_4LFB_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7OJ0|1|A|C|522
7OJ0|1|A|A|523
7OJ0|1|A|G|524
7OJ0|1|A|C|525
7OJ0|1|A|C|526
7OJ0|1|A|G7M|527

Current chains

Chain A

16S rRNA

Nearby chains

Chain 6

Alternative ribosome-rescue factor A

Chain L

30S ribosomal protein S12