HL_7OLC_005

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

7OLC|1|1|C|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.1386

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7OLC|1|1|C|188
7OLC|1|1|U|189
7OLC|1|1|G|190
7OLC|1|1|G|191
7OLC|1|1|A|192
7OLC|1|1|A|193
7OLC|1|1|C|194
7OLC|1|1|G|195

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LY

60S ribosomal protein L26-like protein

Chain Le

60S ribosomal protein L32-like protein