HL_7OLC_031

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_031 not in the Motif Atlas

Homologous match to HL_5TBW_030

Geometric discrepancy: 0.1336

The information below is about HL_5TBW_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OLC|1|1|C|1386
7OLC|1|1|G|1387
7OLC|1|1|U|1388
7OLC|1|1|G|1389
7OLC|1|1|A|1390
7OLC|1|1|G|1391

Current chains

Chain 1

26S rRNA

Nearby chains

Chain Le

60S ribosomal protein L32-like protein

Chain Lq

Putative 60S ribosomal protein