HL_7OLC_033

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCGGUU

Length

7 nucleotides

Bulged bases

7OLC|1|1|G|1490, 7OLC|1|1|U|1494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_033 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1851

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7OLC|1|1|A|1489
7OLC|1|1|G|1490
7OLC|1|1|C|1491
7OLC|1|1|G|1492
7OLC|1|1|G|1493
7OLC|1|1|U|1494
7OLC|1|1|U|1495

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LP

60S ribosomal protein l17-like protein

Chain LR

Ribosomal protein L19

Chain Ll

eL39