HL_7OLC_043

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAACAGC

Length

9 nucleotides

Bulged bases

7OLC|1|1|C|1846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_043 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.2392

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7OLC|1|1|G|1841
7OLC|1|1|U|1842
7OLC|1|1|G|1843
7OLC|1|1|A|1844
7OLC|1|1|A|1845
7OLC|1|1|C|1846
7OLC|1|1|A|1847
7OLC|1|1|G|1848
7OLC|1|1|C|1849

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LR

Ribosomal protein L19