HL_7OLC_044

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7OLC|1|1|U|1905

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_044 not in the Motif Atlas

Homologous match to HL_5TBW_043

Geometric discrepancy: 0.1324

The information below is about HL_5TBW_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7OLC|1|1|C|1903
7OLC|1|1|U|1904
7OLC|1|1|U|1905
7OLC|1|1|C|1906
7OLC|1|1|G|1907
7OLC|1|1|G|1908

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

60S ribosomal protein L41-A

Chain Lp

60S ribosomal protein L43-like protein