HL_7OLC_047

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

7OLC|1|1|G|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_047 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.1235

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OLC|1|1|A|2127
7OLC|1|1|G|2128
7OLC|1|1|A|2129
7OLC|1|1|A|2130
7OLC|1|1|A|2131
7OLC|1|1|G|2132
7OLC|1|1|U|2133

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain LG

60S ribosomal protein L8

Chain LN

Ribosomal protein L15