HL_7OLC_048

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_048 not in the Motif Atlas

Homologous match to HL_5TBW_048

Geometric discrepancy: 0.1363

The information below is about HL_5TBW_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OLC|1|1|A|2183
7OLC|1|1|G|2184
7OLC|1|1|A|2185
7OLC|1|1|A|2186
7OLC|1|1|A|2187
7OLC|1|1|U|2188

Current chains

Chain 1

26S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L44-like protein