HL_7OLC_052

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_052 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1482

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7OLC|1|1|C|2499
7OLC|1|1|U|2500
7OLC|1|1|U|2501
7OLC|1|1|G|2502
7OLC|1|1|C|2503
7OLC|1|1|G|2504

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LG

60S ribosomal protein L8

Chain SB

40S ribosomal protein S1