HL_7OLC_057

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_057 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1526

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7OLC|1|1|C|2652
7OLC|1|1|A|2653
7OLC|1|1|A|2654
7OLC|1|1|A|2655
7OLC|1|1|A|2656
7OLC|1|1|G|2657
7OLC|1|1|G|2658
7OLC|1|1|G|2659

Current chains

Chain 1

26S rRNA

Nearby chains

Chain C

Ribosome-associated molecular chaperone SSB1

Chain LI

60S ribosomal protein L10-like protein

Chain LT

60S ribosomal protein l21-like protein