HL_7OLC_065

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_065 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.1542

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OLC|1|1|C|2983
7OLC|1|1|G|2984
7OLC|1|1|A|2985
7OLC|1|1|G|2986
7OLC|1|1|A|2987
7OLC|1|1|G|2988

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LH

60S ribosomal protein l9-like protein

Chain Lm

Ubiquitin