HL_7OLC_070

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAGACGAC

Length

9 nucleotides

Bulged bases

7OLC|1|1|C|3245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_070 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.135

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7OLC|1|1|G|3244
7OLC|1|1|C|3245
7OLC|1|1|A|3246
7OLC|1|1|G|3247
7OLC|1|1|A|3248
7OLC|1|1|C|3249
7OLC|1|1|G|3250
7OLC|1|1|A|3251
7OLC|1|1|C|3252

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LP

60S ribosomal protein l17-like protein