HL_7OLC_082

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7OLC|1|2|A|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_082 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1801

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7OLC|1|2|C|411
7OLC|1|2|C|412
7OLC|1|2|A|413
7OLC|1|2|A|414
7OLC|1|2|G|415
7OLC|1|2|G|416

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LV

60S ribosomal protein l23-like protein

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24