HL_7OLC_084

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUUUCGG

Length

8 nucleotides

Bulged bases

7OLC|1|2|C|492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_084 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2204

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7OLC|1|2|U|487
7OLC|1|2|C|488
7OLC|1|2|U|489
7OLC|1|2|U|490
7OLC|1|2|U|491
7OLC|1|2|C|492
7OLC|1|2|G|493
7OLC|1|2|G|494

Current chains

Chain 2

18S rRNA

Nearby chains