HL_7OLC_091

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_091 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.0991

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OLC|1|2|C|935
7OLC|1|2|G|936
7OLC|1|2|A|937
7OLC|1|2|A|938
7OLC|1|2|A|939
7OLC|1|2|G|940

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13-like protein

Chain Sa

40S ribosomal protein S26