HL_7OLC_117

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGUAAGCA

Length

9 nucleotides

Bulged bases

7OLC|1|1|G|1114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_117 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2916

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7OLC|1|1|U|1108
7OLC|1|1|G|1109
7OLC|1|1|G|1110
7OLC|1|1|U|1111
7OLC|1|1|A|1112
7OLC|1|1|A|1113
7OLC|1|1|G|1114
7OLC|1|1|C|1115
7OLC|1|1|A|1116

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like protein

Chain Lb

60S ribosomal protein L29