HL_7OLC_120

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUUCUCUUUU

Length

11 nucleotides

Bulged bases

7OLC|1|1|U|1667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_120 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.3319

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7OLC|1|1|A|1659
7OLC|1|1|G|1660
7OLC|1|1|U|1661
7OLC|1|1|U|1662
7OLC|1|1|C|1663
7OLC|1|1|U|1664
7OLC|1|1|C|1665
7OLC|1|1|U|1666
7OLC|1|1|U|1667
7OLC|1|1|U|1668
7OLC|1|1|U|1669

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain LU

60S ribosomal protein L22-like protein

Chain Ld

Putative 60S ribosomal protein