HL_7OLC_121

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

7OLC|1|1|C|1846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_121 not in the Motif Atlas

Homologous match to HL_8P9A_153

Geometric discrepancy: 0.2413

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7OLC|1|1|U|1842
7OLC|1|1|G|1843
7OLC|1|1|A|1844
7OLC|1|1|A|1845
7OLC|1|1|C|1846
7OLC|1|1|A|1847
7OLC|1|1|G|1848

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LR

Ribosomal protein L19