HL_7OLC_123

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

7OLC|1|1|G|2857

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_123 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3739

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

7OLC|1|1|A|2855
7OLC|1|1|A|2856
7OLC|1|1|G|2857
7OLC|1|1|C|2858
7OLC|1|1|A|2859
7OLC|1|1|G|2860
7OLC|1|1|A|2861
7OLC|1|1|A|2862
7OLC|1|1|U|2863
7OLC|1|1|U|2864

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LH

60S ribosomal protein l9-like protein

Chain Lm

Ubiquitin