HL_7OLD_005

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

7OLD|1|1|C|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1136

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7OLD|1|1|C|188
7OLD|1|1|U|189
7OLD|1|1|G|190
7OLD|1|1|G|191
7OLD|1|1|A|192
7OLD|1|1|A|193
7OLD|1|1|C|194
7OLD|1|1|G|195

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LY

60S ribosomal protein L26-like protein

Chain Le

60S ribosomal protein L32-like protein