HL_7OLD_035

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACUCGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_035 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1645

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7OLD|1|1|C|1547
7OLD|1|1|A|1548
7OLD|1|1|C|1549
7OLD|1|1|U|1550
7OLD|1|1|C|1551
7OLD|1|1|G|1552
7OLD|1|1|U|1553
7OLD|1|1|G|1554

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L25-like protein

Chain Lr

60S ribosomal protein L41-A