HL_7OLD_038

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

7OLD|1|1|U|1667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_038 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1273

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7OLD|1|1|G|1660
7OLD|1|1|U|1661
7OLD|1|1|U|1662
7OLD|1|1|C|1663
7OLD|1|1|U|1664
7OLD|1|1|C|1665
7OLD|1|1|U|1666
7OLD|1|1|U|1667
7OLD|1|1|U|1668

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain LU

60S ribosomal protein L22-like protein