HL_7OLD_051

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7OLD|1|1|A|2335, 7OLD|1|1|A|2336, 7OLD|1|1|C|2337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1261

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7OLD|1|1|G|2332
7OLD|1|1|G|2333
7OLD|1|1|G|2334
7OLD|1|1|A|2335
7OLD|1|1|A|2336
7OLD|1|1|C|2337
7OLD|1|1|G|2338
7OLD|1|1|G|2339
7OLD|1|1|G|2340
7OLD|1|1|C|2341

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein