HL_7OLD_056

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_056 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1566

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7OLD|1|1|A|2632
7OLD|1|1|A|2633
7OLD|1|1|C|2634
7OLD|1|1|A|2635
7OLD|1|1|G|2636
7OLD|1|1|A|2637
7OLD|1|1|A|2638
7OLD|1|1|A|2639
7OLD|1|1|U|2640

Current chains

Chain 1

26S rRNA

Nearby chains

Chain B

HABP4_PAI-RBP1 domain-containing protein

Chain LJ

Putative ribosomal protein