HL_7OLD_067

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7OLD|1|1|G|3074, 7OLD|1|1|C|3078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_067 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1209

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7OLD|1|1|C|3068
7OLD|1|1|U|3069
7OLD|1|1|G|3070
7OLD|1|1|A|3071
7OLD|1|1|A|3072
7OLD|1|1|C|3073
7OLD|1|1|G|3074
7OLD|1|1|C|3075
7OLD|1|1|C|3076
7OLD|1|1|U|3077
7OLD|1|1|C|3078
7OLD|1|1|U|3079
7OLD|1|1|A|3080
7OLD|1|1|A|3081
7OLD|1|1|G|3082

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LH

60S ribosomal protein l9-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain Lm

Ubiquitin