HL_7OLD_070

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAGACGAC

Length

9 nucleotides

Bulged bases

7OLD|1|1|C|3245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_070 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1258

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7OLD|1|1|G|3244
7OLD|1|1|C|3245
7OLD|1|1|A|3246
7OLD|1|1|G|3247
7OLD|1|1|A|3248
7OLD|1|1|C|3249
7OLD|1|1|G|3250
7OLD|1|1|A|3251
7OLD|1|1|C|3252

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LP

60S ribosomal protein l17-like protein

Chain Ld

Putative 60S ribosomal protein