HL_7OLD_082

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7OLD|1|2|A|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_082 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.2083

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7OLD|1|2|C|411
7OLD|1|2|C|412
7OLD|1|2|A|413
7OLD|1|2|A|414
7OLD|1|2|G|415
7OLD|1|2|G|416

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LV

60S ribosomal protein l23-like protein

Chain SG

40S ribosomal protein S6