HL_7OLD_085

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAUUUAAAUCCCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_085 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1429

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7OLD|1|2|A|517
7OLD|1|2|A|518
7OLD|1|2|U|519
7OLD|1|2|U|520
7OLD|1|2|U|521
7OLD|1|2|A|522
7OLD|1|2|A|523
7OLD|1|2|A|524
7OLD|1|2|U|525
7OLD|1|2|C|526
7OLD|1|2|C|527
7OLD|1|2|C|528
7OLD|1|2|U|529

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SJ

40S ribosomal protein s9-like protein

Chain SY

40S ribosomal protein S24