HL_7OLD_087

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCUUAAAG

Length

9 nucleotides

Bulged bases

7OLD|1|2|G|764, 7OLD|1|2|U|766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_087 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.2166

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7OLD|1|2|C|763
7OLD|1|2|G|764
7OLD|1|2|C|765
7OLD|1|2|U|766
7OLD|1|2|U|767
7OLD|1|2|A|768
7OLD|1|2|A|769
7OLD|1|2|A|770
7OLD|1|2|G|771

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SJ

40S ribosomal protein s9-like protein

Chain SY

40S ribosomal protein S24