HL_7OLD_098

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_098 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.1182

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OLD|1|2|A|1293
7OLD|1|2|G|1294
7OLD|1|2|U|1295
7OLD|1|2|G|1296
7OLD|1|2|A|1297
7OLD|1|2|U|1298

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein S0

Chain SC

40S ribosomal protein S2-like protein