HL_7OPE_001

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGGGAG

Length

7 nucleotides

Bulged bases

7OPE|1|2|G|19, 7OPE|1|2|G|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_001 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.1897

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7OPE|1|2|C|13
7OPE|1|2|A|14
7OPE|1|2|G|15
7OPE|1|2|G|19
7OPE|1|2|G|20
7OPE|1|2|A|21
7OPE|1|2|G|22

Current chains

Chain 2

tRNA-Ala-UGC

Nearby chains

Chain 1

Uncharacterized protein YabO

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain H

50S ribosomal protein L5