HL_7OPE_002

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCACG

Length

6 nucleotides

Bulged bases

7OPE|1|2|C|36

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_002 not in the Motif Atlas

Homologous match to HL_4YCP_002

Geometric discrepancy: 0.5536

The information below is about HL_4YCP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OPE|1|2|C|31
7OPE|1|2|U|32
7OPE|1|2|C|36
7OPE|1|2|A|37
7OPE|1|2|C|38
7OPE|1|2|G|39

Current chains

Chain 2

tRNA-Ala-UGC

Nearby chains

Chain 0

Rqc2 homolog RqcH

Chain 1

Uncharacterized protein YabO