HL_7OPE_003
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUCGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OPE_003 not in the Motif Atlas
- Homologous match to HL_5AXM_003
- Geometric discrepancy: 0.1199
- The information below is about HL_5AXM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
7OPE|1|2|G|53
7OPE|1|2|U|54
7OPE|1|2|U|55
7OPE|1|2|C|56
7OPE|1|2|G|57
7OPE|1|2|A|58
7OPE|1|2|U|59
7OPE|1|2|C|60
7OPE|1|2|C|61
Current chains
- Chain 2
- tRNA-Ala-UGC
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- 50S ribosomal protein L5
- Chain Q
- 50S ribosomal protein L16
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