HL_7OPE_009

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

7OPE|1|A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_009 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.1038

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7OPE|1|A|G|197
7OPE|1|A|A|198
7OPE|1|A|A|199
7OPE|1|A|A|200
7OPE|1|A|C|201
7OPE|1|A|A|202
7OPE|1|A|U|203
7OPE|1|A|C|204

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L15

Chain b

50S ribosomal protein L28