HL_7OPE_035

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

7OPE|1|A|C|1364, 7OPE|1|A|U|1368

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_035 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1031

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

7OPE|1|A|G|1363
7OPE|1|A|C|1364
7OPE|1|A|U|1365
7OPE|1|A|C|1366
7OPE|1|A|G|1367
7OPE|1|A|U|1368
7OPE|1|A|C|1369

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L17

Chain W

50S ribosomal protein L22