HL_7OPE_038

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAUUGGAUAUC

Length

12 nucleotides

Bulged bases

7OPE|1|A|U|1500, 7OPE|1|A|U|1501, 7OPE|1|A|A|1506, 7OPE|1|A|U|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_038 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1315

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7OPE|1|A|G|1497
7OPE|1|A|U|1498
7OPE|1|A|A|1499
7OPE|1|A|U|1500
7OPE|1|A|U|1501
7OPE|1|A|G|1502
7OPE|1|A|G|1503
7OPE|1|A|A|1504
7OPE|1|A|U|1505
7OPE|1|A|A|1506
7OPE|1|A|U|1507
7OPE|1|A|C|1508

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L17