HL_7OPE_051

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

7OPE|1|A|A|2059, 7OPE|1|A|A|2060, 7OPE|1|A|G|2061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_051 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.122

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

7OPE|1|A|G|2056
7OPE|1|A|U|2057
7OPE|1|A|G|2058
7OPE|1|A|A|2059
7OPE|1|A|A|2060
7OPE|1|A|G|2061
7OPE|1|A|A|2062
7OPE|1|A|U|2063
7OPE|1|A|G|2064
7OPE|1|A|C|2065

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L3

Chain f

50S ribosomal protein L32