HL_7OPE_054

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7OPE|1|A|G|2279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_054 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1023

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

7OPE|1|A|C|2277
7OPE|1|A|U|2278
7OPE|1|A|G|2279
7OPE|1|A|G|2280
7OPE|1|A|G|2281
7OPE|1|A|G|2282
7OPE|1|A|C|2283
7OPE|1|A|G|2284
7OPE|1|A|G|2285

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain Q

50S ribosomal protein L16

Chain a

50S ribosomal protein L27