HL_7OPE_060

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

7OPE|1|A|C|2435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_060 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1023

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

7OPE|1|A|C|2433
7OPE|1|A|G|2434
7OPE|1|A|C|2435
7OPE|1|A|A|2436
7OPE|1|A|U|2437
7OPE|1|A|G|2438
7OPE|1|A|G|2439
7OPE|1|A|A|2440
7OPE|1|A|A|2441
7OPE|1|A|G|2442

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L15