HL_7OPE_061

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUCCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_061 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.1672

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

7OPE|1|A|A|2500
7OPE|1|A|G|2501
7OPE|1|A|U|2502
7OPE|1|A|C|2503
7OPE|1|A|C|2504
7OPE|1|A|A|2505
7OPE|1|A|C|2506
7OPE|1|A|A|2507
7OPE|1|A|U|2508

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Rqc2 homolog RqcH

Chain I

50S ribosomal protein L6

Chain j

50S ribosomal protein L36