HL_7OPE_065

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_065 not in the Motif Atlas

Homologous match to HL_7RQB_064

Geometric discrepancy: 0.1282

The information below is about HL_7RQB_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7OPE|1|A|C|2687
7OPE|1|A|G|2688
7OPE|1|A|A|2689
7OPE|1|A|G|2690
7OPE|1|A|A|2691
7OPE|1|A|G|2692

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Rqc2 homolog RqcH

Chain I

50S ribosomal protein L6