HL_7OX8_001

3D structure

PDB id

7OX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Target-bound SpCas9 complex with TRAC full RNA guide

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OX8_001 not in the Motif Atlas

Geometric match to HL_5TPY_004

Geometric discrepancy: 0.1247

The information below is about HL_5TPY_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7OX8|1|A|A|32
7OX8|1|A|G|33
7OX8|1|A|A|34
7OX8|1|A|A|35
7OX8|1|A|A|36
7OX8|1|A|U|37

Current chains

Chain A

sgRNA

Nearby chains

Chain B

CRISPR-associated endonuclease Cas9/Csn1