HL_7P48_001
3D structure
- PDB id
- 7P48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus ribosome in complex with Sal(B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGUUCGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 7P48|1|5|C|18, 7P48|1|5|G|19, 7P48|1|5|G|20, 7P48|1|5|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7P48_001 not in the Motif Atlas
- Homologous match to HL_3WFS_001
- Geometric discrepancy: 0.1366
- The information below is about HL_3WFS_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7P48|1|5|C|13
7P48|1|5|A|14
7P48|1|5|G|15
7P48|1|5|U|16
7P48|1|5|U|17
7P48|1|5|C|18
7P48|1|5|G|19
7P48|1|5|G|20
7P48|1|5|U|21
7P48|1|5|A|22
7P48|1|5|G|23
Current chains
- Chain 5
- P-site tRNA
Nearby chains
- Chain 6
- ABC-F type ribosomal protection protein
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: