HL_7P48_009

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

7P48|1|A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P48_009 not in the Motif Atlas

Geometric match to HL_7RQB_006

Geometric discrepancy: 0.0835

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

7P48|1|A|G|197
7P48|1|A|A|198
7P48|1|A|A|199
7P48|1|A|A|200
7P48|1|A|C|201
7P48|1|A|A|202
7P48|1|A|U|203
7P48|1|A|C|204

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L15

Chain V

50S ribosomal protein L28