HL_7P48_022

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUAAAU

Length

7 nucleotides

Bulged bases

7P48|1|A|A|658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P48_022 not in the Motif Atlas

Geometric match to HL_1U6B_001

Geometric discrepancy: 0.1892

The information below is about HL_1U6B_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7P48|1|A|A|655
7P48|1|A|G|656
7P48|1|A|U|657
7P48|1|A|A|658
7P48|1|A|A|659
7P48|1|A|A|660
7P48|1|A|U|661

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4