HL_7P48_058

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

7P48|1|A|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P48_058 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1126

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

7P48|1|A|C|2431
7P48|1|A|G|2432
7P48|1|A|C|2433
7P48|1|A|A|2434
7P48|1|A|U|2435
7P48|1|A|G|2436
7P48|1|A|G|2437
7P48|1|A|A|2438
7P48|1|A|A|2439
7P48|1|A|G|2440

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L15