HL_7P7Q_009

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUGGAAAA

Length

8 nucleotides

Bulged bases

7P7Q|1|A|A|347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P7Q_009 not in the Motif Atlas

Geometric match to HL_5J7L_142

Geometric discrepancy: 0.0679

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7P7Q|1|A|U|341
7P7Q|1|A|U|342
7P7Q|1|A|G|343
7P7Q|1|A|G|344
7P7Q|1|A|A|345
7P7Q|1|A|A|346
7P7Q|1|A|A|347
7P7Q|1|A|A|348

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L24