HL_7P7Q_013

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7P7Q|1|A|G|450

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P7Q_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0612

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7P7Q|1|A|G|449
7P7Q|1|A|G|450
7P7Q|1|A|A|451
7P7Q|1|A|C|452
7P7Q|1|A|C|453
7P7Q|1|A|A|454
7P7Q|1|A|U|455
7P7Q|1|A|C|456

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15